PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA30G00292
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 624aa    MW: 71325.2 Da    PI: 8.4361
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA30G00292genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.94.9e-10182229355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + h ++Er+RR+++ ++f  L   +P +     kK++Ka++L  A +++k+Lq
  AA30G00292 182 QEHIIAERKRREKLTQRFVALSAQVPGL-----KKMDKASVLGGALKHLKYLQ 229
                 5799************************.....9******************9 PP

2HLH37.64.1e-12444491355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + h ++Er+RR+++ ++f  L  llP +     kK++Ka++L  Av++Ik+Lq
  AA30G00292 444 QEHIIAERKRREKLTQRFVALSALLPGL-----KKMDKASVLGDAVKHIKNLQ 491
                 5799************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.303179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-8182229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-14183242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-14183248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.50E-9184233No hitNo description
SMARTSM003532.7E-12185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.377441490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-10444491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-15445505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-16445511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.83E-10446491No hitNo description
SMARTSM003536.5E-14447496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MESMVLVKRS KLILEDNNNN QESYSSSSSS VEDDFFGLNL PEIEVRFADK DVLIKILCEK  60
QKGHVVKIMN EIEKLHFSIT NSNVLPFGST LDITIVAQKE SDFSMTLMDV VKSLRILSFE  120
NIGQNVMEHQ DYSPHFLNSI LTPKQDSKLN LNRLNTESIP KAFNGKGIKK PQPLARTQSN  180
AQEHIIAERK RREKLTQRFV ALSAQVPGLK KMDKASVLGG ALKHLKYLQE SVREFEEQKK  240
ERTLESMVLV KISKLIWDKN NEIEDSDINF PEIEVRFSDK DVLIKILCEK QKGYIAKIVA  300
EIEKLNFLIT NTTTLPFGPT LDITIIAKMN TKVEEVNEVQ YTLPHNGYNI DSSFGDFMEQ  360
KPLKILKNLP SSSSLLPTLK PQNHHQSSSR ILSFENVGPN VINQDIEYSP THLNSMFITT  420
KDDPMNAKGT KRAQSLTRSH SNAQEHIIAE RKRREKLTQR FVALSALLPG LKKMDKASVL  480
GDAVKHIKNL QERVKEFEEE KKEKRLESMV LVKRSKLILE DNNSLLSSID DNHNFLRLNL  540
PEIEVRFVEK DVQIKILCEK QKGHVGKIMN EIEKLGFLFT NSSVLQFGPT LDITIIAQKE  600
DNFDMKLIDV MKSLSWLYQT SCDC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1449454ERKRRE
2450455RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_195498.31e-113transcription factor bHLH25
SwissprotQ9T0721e-115BH025_ARATH; Transcription factor bHLH25
TrEMBLR0F3251e-108R0F325_9BRAS; Uncharacterized protein
STRINGAT4G37850.11e-112(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-97bHLH family protein